Linear Mixed Effect Models

  • The de-facto standard textbook when working with linear mixed-effect models is Pinheiro and Bates
  • An informal FAQ for r-sig-mixed-model is given at: https://bbolker.github.io/mixedmodels-misc/glmmFAQ.html
  • MCMCglmm based course notes: https://cran.r-project.org/web/packages/MCMCglmm/vignettes/CourseNotes.pdf
  • Paper on pedigreemm: http://pointer.esalq.usp.br/departamentos/lce/arquivos/aulas/2013/LCE5713/Vazquez%20et%20al%20JAS%202010.pdf

Parallelisation

  • Talk by David Smith @eRum 2018: https://www.youtube.com/watch?v=AYld5NYZ0SE
  • Blog by Ryan Rosario: http://blog.revolutionanalytics.com/2012/08/ryan-rosario-on-parallel-programming-in-r.html
  • Introduction to parallel computing in R: paper by Clint Leach http://michaeljkoontz.weebly.com/uploads/1/9/9/4/19940979/parallel.pdf
  • SO-answer on doParallel error in R: Error in serialize(data, node$con) : error writing to connection: https://stackoverflow.com/questions/28503208/doparallel-error-in-r-error-in-serializedata-nodecon-error-writing-to-con

ggplot2

  • Questions about titles, colors, fills all answered by R Graphics Cookbook
  • Official ggplot2 site: http://ggplot2.tidyverse.org/index.html
  • Saving plots to files: http://ggplot2.tidyverse.org/reference/ggsave.html